miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|237569100|gb|GO839594.1|GO839594 TTCTACGAGAGGGGGATCCTACATTCCGGGAAGAGCTTCTTAACTTCTCACAAAGGGGGCGGATTCTGCAGCTCTCAAAC
TTCAAGGATGACTCCAGCCCAGTTGCTTGGGACTGTTCTGCGTGGGTTCGCACATATGGTCAGTTTTTGGAGGAAAGATT
GGAATGCTTCAGGATACTGAAATATGATGTAGAGGCCGAGCGTTTATCCAAACAAGGTCAAGGTCCTGAAAAGGGGCACA
GTAGAACTCGTGAACTAGAGTCCCAAGATCTATTAGAGCAGTTGCCAGCTTTGCAGCAGTTACTATATCGACTTGTTGGA
TGCCGGCCTGAAGGAGCCGCAAATAACAACTATTTGGTGCAGTATGCTCTAGCTTTGGTGCTAAAAGAGAGTTTCAAAAT
TTATTGTGCGATAAATGATGGAATTATTAACCTTGTCGATAAGTTTTTTGAGATGGCAAGACATGAAGCACTTAAGGCCC
TCGAAATTTACAGAAGGGCTGGCCAGCAGGCAGGGAGTCTATCGACTTCTATGAAAATTGCAGGGGTCTAGAACTCGCGA
GGAACTTTCAGTTTCCCACTCTGAGGGAGCCACCGCAAACATTTCTTGTGACCATGGAGGAGTACGTGAGGGACGCTCCG
CGGATGGTTCCAGTTCGAGATCCACTGGAATTTCCTGAGAGGCTTCTTCTTACATATAAACCCGAAGAATCAGAGGAAGT
TTCTGTACCAGATCCTGTTGAAGAGGAAAGACCACCAGTTGAAGAACCTGTTCCAGAACAGCCTGTTGCAGAAGTTGTTT
CACCTCCTTCCAAGACTGTTGTGGCCGATACTGGTGATTTACTGGGCTTAAATGATCCAAGCCCTGGTGTATCAGCAATA
GAGGAGAGCAATGCTCTTGCATTAGCCATTGTTTCATCAGATGCGAGTACTTCAACAACTAGCACCACTGGATGGCAGAC
AAAGGATTTGATCCACAGGATGGGACTTGCCCTTGTACTGCTCCAGTAACACAAATTCGTCTG




Most similar to sp|Q9LVD8|CAP7_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9LVD8|CAP7_ARATH Putative clathrin assembly protein At5g57200
           OS=Arabidopsis thaliana GN=At5g57200 PE=2 SV=1
          Length = 591

 Score =  246 bits (628), Expect(2) = 4e-82
 Identities = 121/174 (69%), Positives = 139/174 (79%)
 Frame = +3

Query: 3   LREGDPTFREELLNFSQRGRILQLSNFKDDSSPVAWDCSAWVRTYGQFLEERLECFRILK 182
           LREGDPTFREELLN+S R  IL++SNFKDD+SP+AWDCSAWVRTY  FLEERLEC+R+LK
Sbjct: 99  LREGDPTFREELLNYSHRRHILRISNFKDDTSPLAWDCSAWVRTYALFLEERLECYRVLK 158

Query: 183 YDVEAERLSKQGQGPEKGHSRTRELESXXXXXXXXXXXXXXYRLVGCRPEGAANNNYLVQ 362
           YD+EAERL K      K H RTR L                YRL+GC+PEGAA +NYL+Q
Sbjct: 159 YDIEAERLPKASGAASKTH-RTRMLSGEDLLEQLPALQQLLYRLIGCQPEGAAYSNYLIQ 217

Query: 363 YALALVLKESFKIYCAINDGIINLVDKFFEMARHEALKALEIYRRAGQQAGSLS 524
           YALALVLKESFKIYCAINDGIINLVD FFEM+RH+A+KAL IY+RAGQQA +L+
Sbjct: 218 YALALVLKESFKIYCAINDGIINLVDMFFEMSRHDAVKALNIYKRAGQQAENLA 271



 Score = 80.9 bits (198), Expect(2) = 4e-82
 Identities = 48/135 (35%), Positives = 69/135 (51%), Gaps = 6/135 (4%)
 Frame = +2

Query: 524 DFYENCRGLELARNFQFPTLREPPQTFLVTMEEYVRDAPRMVPVRDPLEFPERLLLTYKX 703
           +FY+ C+GLELARNFQFPTLR+PP +FL TMEEY+++AP+   V+  LE+ E+     + 
Sbjct: 272 EFYDYCKGLELARNFQFPTLRQPPPSFLATMEEYIKEAPQSGSVQKKLEYQEKEEEEQEQ 331

Query: 704 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTVVA------DTGDLLGLNDPSP 865
                                               +   A      DT DLLGL++ +P
Sbjct: 332 EEEQPEEPAEEENQNENTENDQPLIEEEEEEPKEEIEVEEAKPSPLIDTDDLLGLHEINP 391

Query: 866 GVSAIEESNALALAI 910
             + IE++NA +LAI
Sbjct: 392 KAAEIEQNNAFSLAI 406


>sp|Q8LBH2|CAP8_ARATH Putative clathrin assembly protein At2g01600
           OS=Arabidopsis thaliana GN=At2g01600 PE=2 SV=2
          Length = 571

 Score =  278 bits (710), Expect = 6e-74
 Identities = 135/193 (69%), Positives = 154/193 (79%)
 Frame = +3

Query: 3   LREGDPTFREELLNFSQRGRILQLSNFKDDSSPVAWDCSAWVRTYGQFLEERLECFRILK 182
           LREGDPTFREELLNFSQRGRILQLSNFKDDSSP+AWDCSAWVRTY  FLEERLECFR+LK
Sbjct: 99  LREGDPTFREELLNFSQRGRILQLSNFKDDSSPIAWDCSAWVRTYALFLEERLECFRVLK 158

Query: 183 YDVEAERLSKQGQGPEKGHSRTRELESXXXXXXXXXXXXXXYRLVGCRPEGAANNNYLVQ 362
           YD EAERL K   G +KG+SRTR+L+               YRL+GCRPEGAAN+N+++Q
Sbjct: 159 YDTEAERLPKSNPGQDKGYSRTRDLDGEELLEQLPALQQLLYRLIGCRPEGAANHNHVIQ 218

Query: 363 YALALVLKESFKIYCAINDGIINLVDKFFEMARHEALKALEIYRRAGQQAGSLSTSMKIA 542
           YALALVLKESFK+YCAINDGIINL+DKFFEMA+HEA+ +LEIY+RAGQQA SLS   +  
Sbjct: 219 YALALVLKESFKVYCAINDGIINLIDKFFEMAKHEAITSLEIYKRAGQQARSLSDFYEAC 278

Query: 543 GV*NSRGTFSFPL 581
                   F FP+
Sbjct: 279 KGLELARNFQFPV 291